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K-Dense-AI/scientific-agent-skills/skills/pyzotero/SKILL.md

pyzotero

Interact with Zotero reference management libraries using the pyzotero Python client. Retrieve, create, update, and delete items, collections, tags, and attachments via the Zotero Web API v3. Use this skill when working with Zotero libraries programmatically, managing bibliographic references, exporting citations, searching library contents, uploading PDF attachments, or building research automation workflows that integrate with Zotero.

Source repository stars
31,966
Declared platforms
0
Static risk flags
0
Last source update
2026-07-28
Source checked
2026-07-28

Decision brief

What it does—and where it fits

Pyzotero is a Python wrapper for the Zotero API v3. Use it to programmatically manage Zotero libraries: read items and collections, create and update references, upload attachments, manage tags, and export citations.

Best for

  • Use this skill when working with Zotero libraries programmatically, managing bibliographic references, exporting citations, searching library contents, uploading PDF attachments, or building research automation workflow…

Not for

  • Tasks that require unconfirmed production actions or broad system permissions.
  • Environments where the pinned source and install steps cannot be inspected.

Compatibility matrix

Platform support, with evidence labels

PlatformStatusEvidenceWhat to check
CodexNot declaredNo explicit evidencePortability before use
Claude CodeNot declaredNo explicit evidencePortability before use
CursorNot declaredNo explicit evidencePortability before use
Gemini CLINot declaredNo explicit evidencePortability before use
Open the compatibility checker

Installation

Inspect first. Install second.

The source command is displayed only when detected. A safe inspection prompt is always available so your agent can explain every action before execution.

Source-detected install commandSource
npx skills add https://github.com/K-Dense-AI/scientific-agent-skills --skill "skills/pyzotero"
Safe inspection promptEditorial

Inspect the Agent Skill "pyzotero" from https://github.com/K-Dense-AI/scientific-agent-skills/blob/e7ac42510774624f327003c95b6650e2883bc01d/skills/pyzotero/SKILL.md at commit e7ac42510774624f327003c95b6650e2883bc01d. List every install step, command, network request, credential, file read/write, external action, and rollback step. Explain whether it fits my task. Do not install or execute anything until I approve.

Workflow

What the source asks the agent to do

  1. 01

    Authentication Setup

    Required credentials — get from https://www.zotero.org/settings/keys: - User ID: shown as "Your userID for use in API calls" - API Key: create at https://www.zotero.org/settings/keys/new - Library ID: for group libraries, the integer after /groups/ in the group URL

    User ID: shown as "Your userID for use in API calls"API Key: create at https://www.zotero.org/settings/keys/newLibrary ID: for group libraries, the integer after /groups/ in the group URL
  2. 02

    Quick Start

    python import os from pyzotero import Zotero

    python import os from pyzotero import Zoterozot = Zotero( libraryid=os.environ['ZOTEROLIBRARYID'], librarytype=os.environ.get('ZOTEROLIBRARYTYPE', 'user'), apikey=os.environ['ZOTEROAPIKEY'], )
  3. 03

    Installation

    Review the “Installation” section in the pinned source before continuing.

    Review and apply the “Installation” source section.
  4. 04

    Retrieve top-level items (returns 100 by default)

    items = zot.top(limit=10) for item in items: print(item['data']['title'], item['data']['itemType'])

    items = zot.top(limit=10) for item in items: print(item['data']['title'], item['data']['itemType'])
  5. 05

    Search by keyword

    results = zot.items(q='machine learning', limit=20)

    results = zot.items(q='machine learning', limit=20)

Permission review

Static risk signals and limitations

No configured static risk pattern was detected

This is not proof of safety. Runtime behavior, indirect dependencies, and hidden external systems are outside the static scan.

Evidence record

Why each signal appears

EvidenceSourceComputedTestedEditorial
SignalValueEvidence typeMeaning
Quality score80/100ComputedDocumentation, specificity, maintenance, and trust rules
Repository stars31,966SourceRepository attention, not individual Skill quality
Compatibility0 platformsSourceDeclared in the catalog source record
Usage guideautomated source guideEditorialGenerated or reviewed according to the visible evidence level

Pinned source

Provenance and original SKILL.md

Repository
K-Dense-AI/scientific-agent-skills
Skill path
skills/pyzotero/SKILL.md
Commit
e7ac42510774624f327003c95b6650e2883bc01d
License
MIT
Collected
2026-07-28
Default branch
main
View the original SKILL.md

Pyzotero

Pyzotero is a Python wrapper for the Zotero API v3. Use it to programmatically manage Zotero libraries: read items and collections, create and update references, upload attachments, manage tags, and export citations.

Current upstream: pyzotero 1.13.0 (PyPI, May 2026). Docs: pyzotero.readthedocs.io.

Authentication Setup

Required credentials — get from https://www.zotero.org/settings/keys:

Store credentials in environment variables or a .env file:

ZOTERO_LIBRARY_ID=your_user_id
ZOTERO_API_KEY=your_api_key
ZOTERO_LIBRARY_TYPE=user  # or "group"

See references/authentication.md for full setup details.

Installation

uv add pyzotero              # Web API client
uv add "pyzotero[cli]"       # + local CLI (Zotero 7)
uv add "pyzotero[mcp]"       # + MCP server for LLM clients (Zotero 7)

Quick Start

import os
from pyzotero import Zotero

zot = Zotero(
    library_id=os.environ['ZOTERO_LIBRARY_ID'],
    library_type=os.environ.get('ZOTERO_LIBRARY_TYPE', 'user'),
    api_key=os.environ['ZOTERO_API_KEY'],
)

# Retrieve top-level items (returns 100 by default)
items = zot.top(limit=10)
for item in items:
    print(item['data']['title'], item['data']['itemType'])

# Search by keyword
results = zot.items(q='machine learning', limit=20)

# Retrieve all items (use everything() for complete results)
all_items = zot.everything(zot.items())

Core Concepts

  • A Zotero instance is bound to a single library (user or group). All methods operate on that library.
  • Item data lives in item['data']. Access fields like item['data']['title'], item['data']['creators'].
  • Pyzotero returns 100 items by default (API default is 25). Use zot.everything(zot.items()) to get all items.
  • Write methods return True on success or raise a ZoteroError.

Reference Files

FileContents
references/authentication.mdCredentials, library types, local mode
references/read-api.mdRetrieving items, collections, tags, groups
references/search-params.mdFiltering, sorting, search parameters
references/write-api.mdCreating, updating, deleting items
references/collections.mdCollection CRUD operations
references/tags.mdTag access and management
references/files-attachments.mdFile download and attachment uploads
references/exports.mdBibTeX, CSL-JSON, bibliography export
references/pagination.mdfollow(), everything(), generators
references/full-text.mdFull-text content indexing and access
references/saved-searches.mdSaved search management
references/cli.mdCommand-line interface (local Zotero 7)
references/mcp.mdMCP server for LLM clients (local Zotero 7)
references/error-handling.mdErrors and exception handling

Common Patterns

Fetch and modify an item

item = zot.item('ITEMKEY')
item['data']['title'] = 'New Title'
zot.update_item(item)

Create an item from a template

template = zot.item_template('journalArticle')
template['title'] = 'My Paper'
template['creators'][0] = {'creatorType': 'author', 'firstName': 'Jane', 'lastName': 'Doe'}
zot.create_items([template])

Export as BibTeX

zot.add_parameters(format='bibtex')
bibtex = zot.top(limit=50)
# bibtex is a bibtexparser BibDatabase object
print(bibtex.entries)

Local mode (read-only, no API key needed)

zot = Zotero(library_id='123456', library_type='user', local=True)
items = zot.items()

Local Zotero 7 (CLI or MCP, no API key)

For searching a locally running Zotero desktop app (including full-text PDF search), use the CLI or MCP server instead of the Web API. Both require Zotero 7 with local API access enabled. See references/cli.md and references/mcp.md.

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